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The RPP method [ 20] is distinct from several commonly used statistical approaches to SFP identification [ 27] in that the RPP method does not accept expression level polymorphisms, which may be attributed to linked cis-acting regulatory regions or to unlinked trans-acting factors.
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When η was too small, the energy-ratio criterion was too strict and the proposed method did not accept even the correct energy distribution of ŝ; consequently, it started to remove the elements uncorrupted by noise.
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This methodology decomposes multi-gene family trees into all implied subtrees containing only orthologs and speciation events, thus enabling the use of supertree methods that do not accept multi-labeled trees as an input (see [ 108], for details).
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