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Wald tests were used for the Robust Poisson method, and likelihood ratio tests were used for the log-binomial method.
In order to evaluate the statistical significance of model improvement by sequential addition of fixed effects, the maximum likelihood method and likelihood ratio tests were applied.
The results of Youden method and likelihood ratio method are surprisingly insensitive against distributional differences as well as pre-test probabilities of the two diagnostic categories.
The AUC values for the predicted and true pathways using the proposed method and likelihood scoring based methods are shown in Figure 6.
A stepwise backward elimination method and likelihood ratios were used to find the best fitted model that also contained clinically relevant variables.
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As an alternative test for incongruence, we used the script concartepillar.py which employs a hierarchical clustering method and likelihood-ratio tests to identify pairs of loci that have incongruent phylogenetic signal [ 55].
To identify recombination hotspots in this region, we used SequenceLDhot, a program that uses the approximate marginal likelihood method and calculates likelihood ratio statistics at a set of possible hotspots.
The species tree and generated gene trees were analyzed with the CODEML program of the PAML 4a package, which implements the re-sampling estimated log-likelihood (RELL) method, and the likelihood ratio tests K-H and S-H.
They estimated the gaps using Raff's method, logit method, lag method, Ashworth Method, and Maximum likelihood Method.
The accuracies of the rough set method and maximum likelihood classification were compared, yielding overall accuracies of 94.15% and 93.88%, respectively.
Their phylogenetic tree was reconstructed by using both Neighbor-Joining (NJ) method and Maximum Likelihood (ML) method.
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