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The generic container for the data and metadata in the model is 'scidata'scidata
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Thus the caDSR supports granular query and retrieval functions that enable application developers to present the definitional metadata about the model in appropriate user interface components.
Is it possible to upload and index/search on more domain specific metadata captured in the DataUp model?
The included Gene Association Workbench allows users to intuitively take advantage of gene association information present in the model metadata, e.g. by simulating (multiple) knockout mutants.
This feature can be particularly useful, e.g. in the case of parsing mathematical models to extract metadata related to the model (15).
True ORFans (i.e. open reading frames that have no detectable homolog in any other genome) would not provide information on the topology but could be included in the model as tip metadata (quantified per genome).
Metadata for the models is provided in JSON format.
The models are stored in the model repository along with the study metadata, movies and images.
The UML loader captures the resulting annotated model and registers it as metadata in the caDSR.
We also designed the method organized metadata in the metadata cluster.
Figure 3 Variation of the necessary time to put metadata in the IUGONET metadata database.
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