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The goal of phylesystem is not to replace systems like Dryad or TreeBASE, but to complement them by storing phylogenetic statements and associated metadata in a consistent format while retaining the history of edits that were made to the data themselves.
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The experience of the OTN project is that this is important and that an easy to implement and user friendly software solution is needed to provide metadata of all the data in a consistent way through a single interface.
Standards should be developed for consistently recording these relevant associated metadata, so that the number of animals tested, the setting in which sampling took place, and the motivation for sampling associated with genetic data can be submitted in a consistent form to public data repositories, along with all sequence submissions.
Feed your dog in a consistent fashion.
Use verbs in a consistent manner.
We addressed this by storing the metadata in a relational database, indexing it with the Apache Solr Web query engine and presenting it in XML format via a consistent set of Web service interfaces (WSIs).
18 By mapping the minimal ICEMR metadata to OBI/OBO terms, we were able to represent metadata in a standard manner and reveal relations between metadata fields.
Main reason is that a domain model represents metadata in a conceptual format [ 8].
Users can browse data and metadata in a web interface map, facilitating data sharing and visualization.
The application server stores metadata in a dedicated database and interfaces to the user web browsers.
Another issue, which sets a limit on our ability to interpret the results, is the lack of metadata, or specifically, the lack of a method for obtaining relevant metadata in an automated way.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com