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Finally, we deem that JSON is better suited as a data and metadata exchange format (while XML is more indicated for document exchange) and in general can be mapped more easily to object-oriented systems such as Java or Python.
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Such links can be stored and conveniently exchanged in the standard metadata exchange formats for specimens (ABCD or Darwin Core).
By adopting the Statistical Data and Metadata Exchange (SMDX) format, more than 500 socio-economic data products can be dynamically searched, browsed, accessed and analysed via the AURIN portal.
It is becoming a de-facto standard, with many tools (Including SEEK) adopting the ISA-Tab format for metadata exchange [ 29].
In our workflow, multiple data types from PRCs are submitted to the center using a data submission protocol and standard exchange format, with the metadata using controlled vocabulary whenever possible.
(An exchange format for exposure scenarios is already being developed).
As the data exchange format (result or output format), the well-documented and proven MDL MOL format V2000 [7] was chosen.
The exchange of graphs is facilitated by the exchange format GXL which is also XML-based.
Openness to different data formats regarding input and output parameters by using JSON as data exchange format.
AnnoSys exposes the annotations in the ABCD standard exchange format.
However the results are not saved into an exchange format.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com