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This information can be represented as metabolite maps using CSI.
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Specifically, metabolites were mapped using (i) BioCyc files linking to KEGG (incomplete); (ii) compound names and unique iNICHi identifiers; (iii) the E. coli specific mapping for iAF1260 [ 48]; and (v) manual curation.
Out of the 229 assigned metabolites, 187 could be mapped using the KEGG database and a KEGG ID could be assigned (Supporting Information Table S-3).
The metabonomic observations were consistent with the parallel analysis of gene expression and pathway mapping using microarray data, identifying metabolites and gene transcripts involved in hepatic metabolism, especially for taurine, choline and creatinine metabolism.
Metabolite mapping was achieved using flat files from BiGG, and reactions were mapped using temporary S matrices for BiGG and the C. beijerinckii network.
Transcription termination sites were mapped using 3' RACE.
All reads were mapped using Maq.
Align your map using the compass.
The application of LC MS based metabolic profiling of biological systems has gained more extensive use in identifying drug metabolite, developing metabolite maps and lending clues mechanism of bioactivation [338].
Highly resolved metabolite maps have been recorded from mouse brain with 12 min temporal resolution.
Between-database reaction mapping was then determined as follows: i. using the between-database metabolite mapping, we identified the set of all compounds shared by BioCyc and KEGG; ii.
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