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Examples of two views of a metabolic model are shown in Figures 3b and 3c.
The stoichiometric equations of the metabolic model are listed in the supplement [Additional file 1].
In Fig. 2A, the absolute spans resulting from FVA for all fluxes in the toy metabolic model are shown.
The detailed list of genes, reactions, metabolites, and gene-protein-reaction (GPR) associations in the metabolic model are available as supplementary information (see Additional file 2).
A detailed list of genes, reactions, metabolites, and gene-protein-reaction (GPR) associations in the metabolic model are available in Additional file 1.
The detailed list of genes, reactions, metabolites, and gene-protein-reaction (GPR) associations in the metabolic model are available as additional files.
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The in silico genome-scale metabolic model is developed using genomic annotation, metabolic reactions, literature information, and experimental data.
A metabolic model was constructed for E. harbinense based on its annotated genome sequence and proteomic evidence.
Accordingly, extreme pathway analysis reduces the metabolic network into a macro reaction scheme, on which a dynamic metabolic model is built.
A genome-scale metabolic model was used to identify new target genes for enhanced biosynthesis of sesquiterpenes in the yeast Saccharomyces cerevisiae.
In this study, a spatiotemporal metabolic model was formulated and evaluated using steady-state CO fermentation data collected from a laboratory-scale bubble column reactor.
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