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To achieve more comprehensive prior knowledge kinase substrate dataset, large enough for statistical enrichment analysis, we merged interactions from several other online sources reporting mammalian kinase substrate relations.
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To merge interactions from various sources, the genes' alias names must be arranged in advance.
MImerge was used to merge interactions from IntAct, BioGRID, MINT and DIP (20).
MImerge removes such redundancies by merging interactions from secondary databases such as iRefIndex (16).
The FI network was constructed by merging interactions extracted from human curated pathways with interactions predicted using a machine learning approach.
Downstream targets of p53 were identified by merging interaction networks identified by IPA and generating all direct transcriptional links from p53 to genes in the network.
The service permits users to merge and score interactions from PSICQUIC services using the PSI MI query language (MIQL) or alternatively, from a PSI MITAB file.
The NOXclass predictions were subsequently merged with the manually annotated interactions from the Zhu dataset.
The MiMI tool provides access to the knowledge and data that have been merged and integrated from numerous protein-interaction databases, and it augments the information from many other biological sources.
We merged reads from both libraries for assembly and annotation.
(A ) Lengths of merged reads from historic sample M-0182898.
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