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This merged database was used for the development and validation of search strategies.
We also compared D tertiolecta with a high-quality annotation of plant species Arabidopsis thaliana, using the latest large Dt merged database (Dt_v10).
Open image in new window Fig. 1 Construction of Mouse Merged database.
The sequences below the spectra were the corresponding full length SEPs according to the Mouse Merged database.
The SEP database was then merged with mouse Uniprot database and Contamination database to form Mouse Merged database (Supplemental data).
This SEP database was then merged with mouse Uniprot database and Contamination database to form Mouse Merged database (MMD) for mass spectrometry (MS) data mining in this study.
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Given their complementary nature, some of these methods can be combined to increase the identification rate, as proposed for instance by the commercial package Peaks (Ma et al. 2003), which merges database search and de novo sequencing results.
Merging databases using different structure identifiers as indexes for integration can reduce quality.
Extra consideration should be taken into account if systematic identifiers are going to be used as a key index for merging databases.
However, when merging databases even more attention must be paid to validity problems.
Merged databases or cross-referencing services use an automatic procedure to identify the same compounds in different databases.
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