Sentence examples for merged assembly from inspiring English sources

Assembly statistics for EvidentialGene tr2aacds pipeline merged assembly compared to average statistics for each assembler.

We tested different merged assembly ranges based on the summary statistics for each individual k-mer assembly [ 43].

Full-length, quasi full-length, and partial protein coding regions were predicted in the Wilson, SP1, and SP3 Oases reference transcriptomes and the SP1 ABySS merged assembly.

Based on the N50 length and mean transcript length, the transcriptomes produced by the Oases merged assembly (MA) technique with K-values of 29 bp (Wilson and SP1) or 33 bp (SP3) were considered optimal and used during all subsequent analyses.

The "Merged" assembly is the result of merging representative assemblies from different kmers using CD-HIT-EST, the "Final" assembly is after potentially misassembled transcripts were removed, and the "Annotated" set only contains transcripts with a significant BLAST match.

This indicates that these proteins are well assembled in the merged assembly, although there is room for improvement.

#merged assemblies after removal of reads < 200 bp and with no BLAST hit.

On the other hand, erroneously merged assemblies would lead to underestimation of the transcript numbers.

In addition, we also tested two merged assemblies with k-mer sizes 27 and 55 using Oases merge.

If a discrepancy in the Al tolerance of the individuals forming merged assemblies arose, then the highest value of the trait was assigned to the assembly.

In this study, PHRAP and Minimus merged assemblies often generated aberrant results (e.g., 1 2 Mb genome assemblies for 5 6 Mb Pseudomonas genomes) and contained a high number of singleton (non-assembled) sequences.