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These spectra were merged and processed as described above for the Orbitrap XL dataset, resulting in 225 merged spectra ("UF" dataset) from 195 substances (184 [M + H] and 41 [M H]. EQex and EQxPlus datasets: Two additional Eawag datasets were also available.
In total, 1184 samples have been genotyped on the Illumina Human-1M and Affymetrix 6.0 arrays, and SNP genotypes merged and processed for quality control.
For technical replicates, Eland aligned files or BAM files were merged and processed as described in Fenouil et al. (2012).
All calculations and plotting were done in the programme language R. [ 79] DNA microarray data from Andersson et.al. [ 67] and Sjödin et al. (submitted) were merged and processed in UPSC-BASE according to the default analysis pipeline [ 78].
Images of HuC/D and DAPI staining were merged and processed with Photoshop CS2 software (Adobe) and the diameter of 25 30 neurons per structure and hemisphere was measured using ImageJ software (http://rsb.info.nih.gov/ij/).
Two-dimensional scattering curves obtained at different exposure time were merged and processed using PRIMUS (Konarev et al., 2003) and distance distribution functions P r), radius of gyration (Rg) and Porod volume were generated using GNOM (Svergun, 1992).
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Then all the BAM for all samples are merged and process through the GATK toolkit to first Realign in/dels and the base Q scores are recalibrated with Recalibration tool.
The biological replicates were merged and the reads were processed using the SICTIN [ 38] tool build_binary into a binary format in which the number of reads at each genomic position is explicitly saved.
Fluorescence images were routinely collected as 1 μm Z-stacks which were merged into one plane and processed further in Photoshop (Adobe) where only the level adjustment was used.
After the data merging and cleaning process, a total of 7,414 records are obtained and used in the modeling stage from the Federal Railroad Administration FRAA) database.
We also note that the merging and acquisition processes make some of the City banks (for example B10005, B10009) highly exposed to many different firms.
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