Sentence examples similar to mer range from inspiring English sources
Probes consisted of 2.17 million 55-mers (range 55-70-mers 55-70-mers 55-70-mers-repetilede sequences athroughout spacing of 92 bp.
Optimal assembly was achieved with a k-mer range of 19 to 41.
This included use of a broad k-mer range with a low starting k-mer of 19 or 21 up to a k-mer of 33 or 35.
Assemblies were compiled for a k-mer range of 19 to 49 with an expected insert size between paired ends of 300 bp and a coverage cut-off value set to 4.2.
Contigs from assemblies outside the 23 29 k-mer range show a reduction in coverage caused by fragmentation in assemblies with shorter k-mer lengths and conservative assembly with larger k-mer lengths.
The merged assembly from a k-mer range of 21 to 39 scored best on the balance of these parameters with a N50 value of 1,856 and a total number of contigs of 107,749.
Filtered reads were assembled with Velvet (Zerbino and Birney 2008) and a k-mer range from 23 to 63. Contigs were further assembled using the Geneious assembler (Drummond et al. 2011).
The number of reads obtained for each library is shown in Table 2. De novo assemblies were conducted with the quality-filtered reads using the VelvetOptimizer script provided with Velvet (Zerbino and Birney, 2008; k-mer range: 43 81; http://bioinformatics.net.au/software.velvetoptimiser.shtml) or Geneious (using default settings and medium to high sensitivity; http://www.geneious.com/).
This hypothetical array would detect 75% (2314 of 3065) viruses with a median of 3 positive non-human 15-mers (range: 0 to 1,705) and 100% (of 433) bacterial species with a median of 3,873 positive non-human 15-mers (range: 1 in the obligate endosymbiont Candidatus Carsonella ruddii PV, up to 92,127 in Burkholderia 383).
A set of transcripts was generated for all odd values of K-mer ranging from 21 to 49.
The first transcriptome was assembled from the Illumina paired-end reads using a fast short-read assembler (SOAPdenovo) with multiple k-mers ranging from 41 51 bp.
