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For efficient processing of queries, we need to ensure that memory usage stays low.
With increasing numbers of true clusters, the time requirement also changes sublinearly and the memory usage stays almost constant (Supplementary Table S3c).
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Pyicos callpeaks protocol for ChIP-Seq data outperforms the other tested methods concerning memory usage while it stays competitive in running time.
In the performance tests of this study, the memory usage was 36 50 GB, and it stays <100 GB even for entire mammalian genomes.
Running all four methods with conditions as similar as possible (Supplementary Material), we observed that Pyicos is more efficient in memory usage than the other three methods (Fig. 1e) and stays competitive in running time (Supplementary Fig. S14).
Download a program that will check and record Safari's memory usage.
If you choose Memory used by apps, then you can view the worst offenders of hogging memory usage.
Figure 3 Memory usage.
b Memory usage.
This results in memory usage.
CPU time and memory usage.
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