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Personally, I can remember the early days of computers when data storage and memory constraints were at a premium.
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Coupled with a radix-clustering system that lowers memory latencies, we find that PaMeCo can offer competitive performance levels to other contemporary hash join algorithms in an unconstrained environment, while being up to three times faster than a high-performing hash join when memory constraints are applied.
It is assumed that the sink node has no memory constraints, which is able to store all out-of-order packets until the gaps are filled.
This global result needs to be tempered because one week-effort of manual memory optimizations and also some manual constraints were necessary to obtain such a fast deployment.
Due to possible memory constraints, it is recommended to use Linux machines when analyzing more than a few thousand chemicals at a time.
All trees used in benchmarking are available in Newick format in additional file 2 and 3. Any calculation failing due to memory or time constraints was not rerun, but considered a failed attempt.
The time constraints were there.
Irritant's constraints were similar to "Pigs"'s constraints.
No constraints were used.
No other constraints were applied.
The SUBSCALE algorithm has been reworked to accommodate the scalability irrespective of the main memory constraint, which was still a bottleneck in the previously published version.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com