Sentence examples for members were annotated from inspiring English sources

To test for an involvement of uncoupling proteins (UCPs) in the cold adaptation of zebrafish, five UCP members were annotated and identified (zucp1-5).

Two additional Argonaute family members were annotated: JX483728 and JX483729.

Four of the six GH15 members were annotated as candidate glucoamylases or related enzymes (Additional File 1).

Representative CDF members were annotated from diverse genomes across the Viridiplantae and Rhodophyta lineages and used to identify phylogenetic relationships within the CDF family.

For the training set, only full-length endogenous precursor and mature conopeptides isolated at the protein level, or sequences from a superfamily where all members were annotated at the gene/DNA level, were used.

Today, 15 members are annotated in Arabidopsis.

Based on our evaluations at intervals of 10%, the 50% threshold (percent of protein family members being annotated with one term) produced optimal differences among different clades and lineages of the phylogenetic tree (Fig. S2).

We note that in all cases where an enzyme is associated with more than one CLOG, there usually is a dominant CLOG associated to almost all strains and a small number of secondary CLOGs whose members are annotated with the same enzyme.

As for InterPro domains, protein clusters were assigned GO terms, when at least 75% of the cluster member proteins were annotated with that GO term.

Besides isoprenoid metabolism, two member enzymes were annotated as orthologous to SmCYP98A75 and SmCYP73A120 that are - a β-coumaryl-CoA 3′-hydroxylase and a cinnamate 4-hydroxylase respectively, key enzymes in rosmarinic acid biosynthesis [ 48, 51].

Other genes encoding HSPs were also annotated in the present study (Additional file 7), including members from the HSP40, HSP60, HSP70, HSP90 classes; a total of 19 members of HSPs were annotated for P. viridis.