Sentence examples for median transcript length from inspiring English sources

The median transcript length for the de novo fragments was 303 bp, with a median ORF length of 98 amino acids, and a median ORF coverage of 99%.

The median transcript length for each method was taken as the point at which half of the integrated area was achieved.

The median transcript length increased from 987 (V1.2) to 1248 bases (V1.6) which can be explained by a higher percentage of annotated UTR regions in this release.

for genes that encoded multiple alternative transcripts, we divided by the median transcript length; our results did not change if instead we divided by the shortest, the longest, or a randomly chosen transcript length.

First, commonly used quality parameters were measured: the median transcript length (N50), defined as the length of the longest sequence such that the sum of the lengths of sequences equal or longer is equal or greater to half the length of all assembled sequences, number of transcripts, and average transcript length.

Based on the 99 complete CDSs available in GenBank, the mean and median transcript lengths were practically the same (1278 bp; Table 4).

N50, mean, and median transcript lengths were largely comparable across species; however, they were lowest for V. subterranea, for which the smallest number of reads was obtained (Fig. 1B).

As some of these might be due to fragmentary gene models, we excluded models from the analysis that are significantly shorter than the median transcript lengths of non-Physcomitrella cluster members.

Our transcript length dataset has a mean and median of 2,165 nucleotides and 1,996 nucleotides respectively.

To calculate relative transcript abundance and estimate the median expression, we integrated transcript signal over the length of the longest transcript for each gene and normalized to transcript length by using the same pipeline as for H3K27me3 and H3K36me3 gene-body signal.

We analyzed various assembly parameters such as total number of transcripts, N50 (N50 is a weighted median statistic indicating that 50% of the entire assembly is contained in contigs equal to or larger than this value), longest transcript length, and average transcript length as a function of k-mer length.