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The median sequence variation (for protein coding genes in all 36 strains) was calculated to be ~0.47%, which is consistent with previous reports that found sequence variation in P. aeruginosa to be about one order of magnitude lower than in other γ-proteobacteria [ 26, 27].
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Diversity was found in 113 genomes, with mean 0.40% and range from 0.01% to 4.04% (median 0.24%, interquartile range (IQR) 0.10%–0.52% sequence variation).
We used Network version 4.2.0.1 to draw median joining networks based on the combined Y-STR and Y-SNP information, and on HVS1 sequence variation.
A Monte Carlo simulation of the median sequence and smoothing parameter combinations creates confidence intervals for assessing the forecasts.
Visual profile of sequence variation is summarized in Figure 6.
Gene flow could also homogenize sequence variation across populations [41].
SEQUENCE VARIATION: variation information, variation ID 1.b.
SEQUENCE VARIATION: variation annotation, P -value 1.a.
SEQUENCE VARIATION: variation annotation, phenotype name 1.c.
Network analysis of mtDNA variation Sequence variation in CYTB (687 bp fragment in 149 individuals from 36 populations; Table 1) was visualised as a haplotype network using the median-joining algorithm in Network 4.610 [ 28].
Sequence variation of AhLOX7_5 ' amplicon.
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