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The intensities of transcripts were summarized by median polish method.
Probeset summarization was calculated using the robust median polish method [ 15] on the normalized data.
From these values, qPCR summary statistics were computed using the "median polish" method.
For AFF analysis, only perfect match probes were taken into account and probesets were summarized with the "median polish" method.
Applying the median polish method [ 58] after normalization, the probe-set intensities of each probe set were summarized.
Probe-set intensities of each probe set were summarized by applying the median polish method [ 29] after normalization.
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The median is a robust estimate that is consistent with the median polishing method.
Our summarization is a modified version of the median polishing method [22] in RMA (the Bioconductor affy package http://www.bioconductor.org/).
That is, for three replicates of a mutant and the wild type, we summarize their expression values by the median polishing method.
Gene expression values were calculated from the PM probes with the median polish summary method [27].
Interchip normalization used the qspline algorithm with median polish summary method.
More suggestions(15)
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median split method
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median scaling method
median filtering method
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median t method
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median effect method
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