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The median network algorithm is also popular in the analysis of binary sequences.
Relationships among the different M1 haplotypes were inferred using the reduced median network algorithm [ 56].
Phylogenetic relationships among complete mtDNA sequences were established using the reduced median network algorithm [ 56].
Phylogenetic relationships among partial and complete mtDNA sequences were established using the reduced median network algorithm [59].
Phylogenetic relationships among HVSI and genomic mtDNA sequences were established using the reduced median network algorithm [ 58].
Phylogenetic relationships among the complete mtDNA sequences were established using the reduced median network algorithm http://www.fluxus-engineering.com and the tree was checked manually to resolve homoplasies.
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http://www.fluxus-engineering.com and the Median Joining network algorithm [ 100].
The genetic distances among M. simplex haplotypes were reconstructed using two methods: the Median Joining network algorithm implemented in NETWORK 4.6 (http://www.fluxus-engineering.com) and the statistical parsimony procedure for phylogenetic network estimation, with 95%% criterion for a parsimonious connection applied in TCS 1.21 [ 41].
The hypothetical human ancestral sequence (ANC) was derived based on the comparison between human and chimpanzee genome sequences as described by Lo et al. [11] The genetic relationships between the inferred haplotypes were generated by NETWORK version 4.5 [45], using the phylogenetic median-joining network algorithm.
software (http://www.fluxus-technology.com) using the Median-Joining network algorithm (27).
A haplotype network was created with the cytochrome-b DNA (cyt b) data using the median joining (MJ) network algorithm [61] using NETWORK 4.5.0.2 (fluxus-engineering.com).
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