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The median mapping coverage was over 5,000× in depth.
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For both alignments, the median coverage at the ABP1 locus (bases 1 319 656 - 1 321 477 of NC_003075) was compared to the surrounding 20 Kbp region and to the whole chromosome 4. Mapping coverage is defined as the number of reads mapped to a given base.
To maximize the mapping coverage short reads were mapped single-end.
Peroperative median MAP was 71 mmHg (IQR 69; 77).
Chicken genetic map coverage in SNP/cM for each chromosome.
DArT markers provided map coverage approximately equivalent to existing markers.
Map coverage of UMD3.1 ranges from 73 to 95%%.
High density genetic linkage maps usually report map coverage over 90% [ 46, 95].
Map coverage with anchor markers was of 399.5 cM, a 78% of the complete map.
To increase map coverage, SRAP markers were added to the framework map to construct an integrated map.
Median genome coverage estimated from mapped reads into 6,899 single copy genes was of 59.1 and 35.0 for PAB-4377 and LEM1537, respectively.
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