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Our results also suggest that in addition to other mechanisms, transposition may play an important role in the efficient spread of the most expanded TR family.
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This paper presents a comprehensive description of TE classification and nomenclature, based on a combination of TE sequence structure, phylogeny and mechanisms of transposition.
Second, because host regulatory mechanisms suppress transposition, other potentially active TEs (elements shown previously to transpose when epigenetic regulation is impaired) may have been activated in these accessions along with Pong.
Consequently, determining the mechanisms of transposition control, inactivation and purging are central to the understanding of proviral dynamics in the host genome [5], [12], [16], [19], [20].
The quantitative importance of ISs is coupled with a large diversity of families and mechanisms of transposition.
Other mechanisms of transposition in C. elegans and other species have been reviewed by Huang et al. [ 63].
However, their sequence structures and mechanisms of transposition are completely different from those of other DNA transposons.
Large number of diverse TEs exists in genomes, grouped into two basic classes based on mechanisms of transposition.
According to the mechanisms of transposition, TEs are categorized as RNA-mediated (retroelements such as long terminal repeat (LTR) and non-LTR-retrotransposons) or DNA-mediated (DNA transposons).
Furthermore, the rarity of stop codons and/or indels also suggested that complementation in trans and retrotransposition in cis were not relevant mechanisms of transposition [ 17, 18].
For example, it was proposed that mechanisms of transposition spread human alpha satDNA to new genomic locations (Alkan et al. 2007).
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