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To generate an overall prediction of causality, ten different measures of variant deleteriousness that are available from existing tools and databases, along with a gene haploinsufficiency prediction score, are combined with a phenotype-specific gene score.
Given the potential link between cytoadherence and endothelial activation we explored two measures of variant surface antigen (VSA) expression: rosetting and group-A like var, in relation to ang-2 levels.
Multiple methods for deriving pathway signatures from simultaneous whole genome mRNA measurements have been developed over the last decade, with many pathway signatures published and validated as representative measures of variant biological processes.
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This suggests that more direct measures of a variant's involvement in transcriptional regulation, such as location in or near a DNAse I hypersensitive site (DHS), are better predictors of association than proximity to a nearby transcription start site (TSS) or other gene centric landmark.
There is a current vogue for investigators to include measures of allelic variants in studies of cognition and cognitive disorders.
Pairwise LD measures of all variants using the control dataset are presented in Figure 4. |D'| values show a high degree of LD for all SNP pairs while the more stringent r2 measure, dependent upon allele frequency, shows a limited block of LD involving mainly SNPs located in the second half of the NBN gene.
NRS measures the proportion of variant loci identified in the NGS-based data also identified as variants in the array-based data.
We demonstrate the utility of this library for population genetic inferences by examining a tree statistic we call 'imperfection,' which measures the reuse of variant sites within a phylogeny.
We used the unheated activities only to obtain a larger set of sequences, but did not measure the activities of variant sets 2 or 3 without heating.
Table 2 All dyadic juxtapositions of the six measures of demographic time Variants of APC AP(C) C = P − A The AP(C) temporal plane constitutes the classical Lexis diagram.
Dimension reduction is carried out by adapting in time commonly used latent variable techniques for a given relevance function, as evaluation measure of time-variant transformation.
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