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Using these measures of sequence and structure similarities, we find that structural changes within a protein family are linearly related to changes in sequence similarity.
Measures of sequence variation within each lineage and overall are summarized in Table 1.
The Spearman's correlation coefficient (r) was calculated to determine the relationship between measures of sequence diversity and the estimated year of infection.
Other measures of sequence variation that incorporate haplotype frequency estimates (such as π) were not estimated because our targeted sampling scheme would not yield unbiased frequency estimates.
Next generation sequencing of plastid genomes should be able to provide more data, and in turn more accurate measures of sequence divergence and of plastid DNA ages in Callitropsis [37].
RSD and RBH display a high degree of dependence, despite using slightly different measures of sequence similarity, because both are based on a similar rationale of reciprocally identifying the most similar proteins across two genomes.
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Together these results supported our hypothesis that both qe− and C represent sensitive measures of sequence-structure fidelity.
Together, these findings suggest that Q-scores by themselves are not reliable measures of sequencing accuracy.
It is found that the degree of blockiness, a measure of sequence distribution, under the same polarization temperature generally increases with increasing POB content in the POB/PET copolyester.
The misclassification measure of sequence O is defined by: d c ( O ) = − g c ( O, Λ ) + log 1 1 − C ∑ j, j ≠ c exp [ η g j ( O, Λ ) ] 1 η (12).
We used the number of non-synonymous over synonymous mutations as a measure of sequence divergence of paralogous copies of HGT family members.
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