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Nonetheless, measures for linkage to care must identify patients who have enrolled in HIV clinics.
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Recently, there have been several studies specifically investigating potential string comparisons using privacy protection measures for record linkage projects [ 9, 11– 13, 42– 42].
The purpose of the Bayesian analysis was to have an objective statistical measure of linkage for each HIV-1 transmission event that could account for the prior probability that HIV-1 sequences from these partner pairs in long-term sexual partnerships would be linked.
The advantage of using this measure for assessing linkage equilibrium is that it combines measures over all loci as a single estimate and it allows a robust statistical test for the agreement with the null hypothesis of panmixia.
Measures of linkage disequilibrium (LD) were calculated within haploview.
A pair-wise measure of linkage disequilibrium (D') was also calculated for each pair of FCGR genes.
Association testing for the haplotypes as well as the measure of linkage disequilibrium (D') between all pairs of SNP's was performed using the same software.
This pairwise consistency score is inspired by the D'-measure of linkage disequilibrium where the statistical correlations among population genomes are measured for pair sites.
D' – statistical measure of linkage disequilibrium (D' = 1 is known as complete linkage).
This is especially true for SQ, as it produces significantly more positive findings than any other smoking measures for ND in both linkage and association analyses [43].
5 6 17 We excluded patients that had missing data on race (n=5583) and on postal codes as this precluded us from obtaining socioeconomic measures for these patients through linkage with the US census data (n=31 447).
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