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These factors include the choices of informativeness measures, batch selection strategies, seed size, and domain-specific factors such as feature representation and the choice of database.
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The following two-parameter logistic model (Equation 1) was fitted to the repeated measures (batches) of residual herbicide, y = exp left(a + btright)/left(1 + exp left(a + btright)right) (1).
Composite samples from each type of roasting were analyzed, to avoid measuring batch to batch variability but rather focusing on the impact of the different processing methods.
We always processed equal numbers of SALS and controls together to minimize batch effects and upon completion of the studies, we measured batch effects and they were minimal (data not shown), indicating evenness of acquired data between disease and control.
From the beak colour spectrograms, we extracted 6 spectral characteristics that describe the shape of the spectral curve and captures the points of maximal sexual dimporhism [ 43], which were corrected for measuring batch and sex of the bird as fixed effects and precise age at measure as a continuous fixed effect, by taking random effect estimates from linear mixed effect models.
In addition, growth rate estimates for individual colonies were generally consistent with population growth rates measured using standard batch culture.
The conveyor belt with a vibrating feeder and controlled variable-speed was used to measure batched grains.
standard (pooled PBMC RNA from 35 healthy adult volunteers) was included in each group to measure batch-to-batch variation.
As quantitative measures of batch effects, we counted the percentage of CpGs that were associated with the batch effects for Dataset 2 and 3.
In the third experiment, growth rates measured for individual colonies were comparable to population growth rates measured in batch cultures across five M. aeruginosa genotypes (growth rate mean±SE, flask = 0.381±0.057, chambered slide = 0.392±0.077, Fig. 4).
This explains the low glyoxylic acid concentrations measured by Carlton et al. (18) and suggests that formic and glyoxylic acid concentrations measured in batch experiments described here do not accurately reflect concentrations in the reaction vessel.
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