Sentence examples for measure the transcriptome from inspiring English sources

DNA microarrays and particularly Affymetrix GeneChips are widely used to measure the transcriptome of samples.

We performed RNA-seq to measure the transcriptome response to each HDAC inhibitor at the chosen concentrations.

Although both RNAseq and microarray analyses measure the transcriptome, studies report different genes as DE using one method or the other, even when using the exact same samples [ 43– 43].

Although we cannot yet measure the transcriptome of individual cells in intact embryos, we can use our dataset to analyze the co-expression of key segmentation genes in individual cells over 1 h of development.

In contrast to Affymetrix and Illumina arrays which measure the transcriptome of one sample at a time, Operon and many other custom arrays utilise two dyes to assess comparative gene expression of two samples on the same chip.

Here we propose a meta data analysis approach to the analysis of GM plants, by measuring the transcriptome distance to untransformed wild-types.

Compared with microarrays, RNA-Seq measures the transcriptome without prior knowledge of genome sequence and enables the detection of previously unknown transcripts.

We validated the relevance of our gene clustering by measuring the transcriptome response to epigenome-modulating drugs, and we identified EWS-FLI1-specific enhancer and super-enhancer signatures that are dependent on EWS-FLI1 expression.

Measuring the transcriptome is a key point in the decipherment of molecular constituents and in understanding functional elements of the genome, and leads to a better insight into cellular dynamics, for example during development or disease.

The second RNAseq experiment measured the transcriptome response of a susceptible cassava plant (cultivar MCOL1522) infected with both a pathogenic and a non-pathogenic strain of Xanthomonas axonopodis pv.

As a way to introduce and discuss microarrays and deep sequencing for measuring the transcriptome we will use a fly example from our own laboratory: specifically, experiments designed to profile gene expression in female and male heads of Drosophila pseudoobscura.