Sentence examples for measure the backbone from inspiring English sources

The pairwise structure comparison tool DaliLite (29, 30) was used to measure the backbone structure similarity of proteins within each orthologous cluster defined by the eggNOG database.

We also measured the backbone dihedral angles for residues in the loop across the entire trajectory.

We measured the backbone 15N longitudinal and transverse relaxation rates R1 and R2 of CfAFP-501 and calculated the rotational correlation time τc by rotational diffusion tensor analysis.

To test how this compares to the rigidity of the polyQ core, we also measured the backbone N R1 rate for site-specifically uniformly C- and N-labeled Q10 in K2Q11PGQ11D2 fibrils (see also ref (48)).

To understand the relationship between the speed of fishes and some particular physical parameters of their backbones one may build a swimming robot, intervene on the characteristics of its backbone, and measure the resulting speed in search of a correlation.

The root mean squared deviation (rmsd) from the initial structures measured over the backbone atoms of GR LBD-RU486 complex reveals that during the first 20 ns the system undergoes important complexational changes, revealsng in thatexpansion of the receptor to accommoduringhe RU486 voluminous molecule (Figure S3C).

The accuracy of a loop prediction is measured by the backbone RMSD of the predicted and native loops after superimposition of the stems.

The H/DX-MS technique allows analysis of protein conformational dynamics in solution by measuring the exchange of backbone amide hydrogens with the deuterium bulk solvent.

As second measure of the backbone anisotropy, the monodomain sample was physically extended.

C NMR has many advantages for a metabolomics study, including a large spectral dispersion, narrow singlets at natural abundance, and a direct measure of the backbone structures of metabolites.

We measured the φ values for the backbone amides of PKA-C in three different forms: apo, ADP-bound (binary complex), and ADP/PKI peptide-bound (ternary complex).