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For the other nine genes, mean transcript levels were between 36% (At4g39090) and 141% (At5g59310) higher in B. divaricarpa than in A. thaliana.
For five of the six genes we could show that their mean transcript levels are at least two-times higher in the L. gredleri MAGs relative to body carcasses, this holding for all three of the analyzed male life cycle stages, except for ciao-1 in the males running outside the nest that were sexually mature (males outside nests) samples.
Bars represent the log2 values of the ratio of the mean transcript levels for inoculated vs. non-inoculated plants from two technical replicates.
Only gene whose mean transcript levels changed by more than two-fold for at least one time point during the 24-hour time-course were considered significant.
Therefore, higher mean transcript levels in B. divaricarpa may be at least partially attributable to the contribution of several gene family members.
These studies identified Eef1a2 as one of the genes highly expressed in PCT (Figure 1A), with mean transcript levels in PCT being around five-fold higher than in the other tumor classes.
Similar(43)
Throughout this paper, the genes targeted by transcript probes are called "T-genes", which means "transcript-level genes".
Only At1g64720, encoding a presumptive membrane protein of unknown biological function, displayed a higher mean transcript level in A. thaliana.
We used these data to estimate the number of genes that showed a) differences in mean transcript level between species, and b) differences in transcript patterns between species.
Finally, trancript levels from each array were multiplied by a constant so that mean transcript level of spike controls equaled 1.0 on each array.
Given that the CV and VMR were obtained using the mean transcript level per experiment, they act as estimates of transcript variation in response to perturbations in development, abiotic stress or natural genetic variation rather then simply a measure of experimental variation.
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