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Note that we drew k from a geometric distribution that approximated the real size distribution but allowed for sampling gene sets smaller than ten (the minimum gene set size) to obtain sufficient sets to fill the smallest set length bins (2) X ∼ Geom (p = 1 / (mean (set size ) − 1 0 ) ) + 5 In very few occasions, the N/ S ratio of a (random) gene set was not defined, because S was zero.
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The mean probe set size is increased for gene- and transcript related sets (e.g., for the HG-U133A array: ENSEMBLE gene)~14.9; ENSEMBLE transcript)~13.9; Refsequ~14.9) and decreased for exon-related sets (ENSEMBLE(exon)~9.3) compared with the original Affymetrix set definition (NetAffx~11.1).
Mean distances were computed for each read set size and a further mean was taken over all vertices (Fig. 4).
To test our hypothesis of nighttime impairment we looked at the effects of work episode and session on the mean RT and RT x set size intercept, from the ANOVA.
Both correct and incorrect trials were merged for the statistical analysis, because the overall accuracy was high (mean over all set sizes: 90.1%).
The dramatic difference in gene expression between cancer and normal tissues meant that a smaller training set size was needed to develop a highly accurate classifier [Additional file 1: Supplemental Section 6.3].
In particular, the mean and variance may exhibit a distinct relationship with the get set size.
The parameters used were the following: maximum gene set size: 200; minimum gene set size: 5; with the mean of replicates, 10,000 iterations and full resampling.
We compared the mean voluntariness ratings across all possible stimulus set sizes (where the stimulus set size was defined at the number of different numbers present in the stem).
This increase in the mean set thickness reflects an increase of the angle of climb and/or dune size.
It means that LASSO-based LS method needs to have enough training set size to obtain the best effect.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com