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In Stage 1, the analysis was restricted to 'Affymetrix' datasets (n=299) since examination of the mean profile pairs-plot for each dataset suggests that 'Affymetrix' datasets were most comparable (see online supplementary figure S4).
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For untreated SMNΔ7 and normal control mice, mean profile plots for CMAP and MUNE were generated.
To compare gene expression profiles under different treatments, we plot the mean expression profile of the clustered genes in one case and the mean profile of the same (not clustered) genes in other cases.
I mean, profile.
In addition to plotting the profiles separately, the profiles for all ten noise realizations were also averaged into a mean profile.
The mean phenotype for a twin pair plotted against the mean allele length for the twin pair in DZ twins (a between-pair analysis).
Mean of the spontaneous activity correlations for all cell-pairs plotted against the binned distances between these cell-pairs.
Overall, plot α-diversity did not differ between environmentally paired plots in the Alps and the Scandes (Figure 4): plot α-diversity was not significantly higher (one-tailed Student's paired-sample t-test, t = −1.97, d.f. = 402, P = 0.98) in the Alps (mean: 19.92; SD: 8.81) than in the Scandes (mean: 21.07; SD: 9.15).
Because the mean free path influences the predicted profile, the plotted predicted profile (blue line) is the average of the profiles predicted at different mean free paths.
Suitable graphical (eg, box plots, labelled scatter-plots and case profile plots) and numerical summaries (means, medians, SDs and quartiles) will be provided for all variables at baseline and for corresponding change scores.
Here, we plotted the mean occupancy profile for both Rsc8 and Ioc3 across the promoter for each of the six clusters identified in Figure 5.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com