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For each line, mean phenotypic variables were calculated by averaging the data of all individuals originating from the same line.
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To test for difference in the mean of phenotypic variables (MD, age, body mass index (BMI)) in different clusters of women, we used two-sided t-tests (assuming equal variance in the groups) and analysis of variance (ANOVA) for continuous variables and chi-squared/Fisher's exact tests for categorical variables [ 22].
The phenotypic values of the 2007 field trial were analysed by a two-way ANOVA with a genotype and a block effect, and the mean values of phenotypic variables were calculated for each accession (proc GLM, SAS Institute).
The VC was not significantly associated with any criteria when considering phenotypic variables within a given time-point; however, the VC was significantly associated with Δ mean viral titer (Spearman's rho= 0.8459, Figure 6B), Δ mean viral mRNA (rho =0.8544), and Δ mean viral gRNA (rho =0.8426) at the previous time-point.
The mean phenotypic diversity among landraces (GST) was 0.21.
The Pearson correlation coefficient was used to estimate linear associations among phenotypic variables.
Mean phenotypic values of both parental lines are indicated by arrows.
MAX and TOP3 were equivalent phenotypic variables to be used in a GWAS.
Additional phenotypic variables were described.
In the measurement model, the observed phenotypic variables are linked to the latent phenotypic construct.
All the phenotypic variables were tested for normal distribution.
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