Sentence examples for mean per base from inspiring English sources

Mean per base depth was also widely variable, ranging from 409.61 to 25.12.

Mexicans show also the highest mean per base depth (409.61), while the minimum depth score is for Kinh (Ho Chi Minh City, Vietnam) mitochondrial genomes (25.12).

The expression levels were normalized by mean per-base read coverage with unambiguously mapping reads.

5′/3′ Coverage: the mean per-base coverage for end regions of RNA transcripts.

FastQC [ 14] overview of raw sequences showed that mean per-base quality remains above 24 for the first 350 bp and, thereafter, drops rapidly towards the end of the reads (data not shown).

We excluded ORFs that lacked a mean per-base coverage ≥10-fold in both orthologs, but retained 3091 NC genes as well as 74 ORs, four IRs, one GR, 10 OBPs and five CSPs (Table  2).

We used the pooled read sets representing 40 males per species to infer sites fixed for differences between all detected orthologous NC and chemosensory genes with ≥10-fold mean per-base coverage in Euglossa dilemma and E. viridissima.

The mean per-mtDNA-base read depth from the WES was 130.5-fold 130.5-fold.5 and minimum 4,100.3), with just under two-thirds of the 46 samples exceeding a mean per-base coverage depth of 10-fold, and having greater than 90% of the mitochondrial genome covered to the minimum depth of 5-fold we required for variant calling (Supplementary Figure S1 online).

Eight of the patients' exomes were generated from muscle DNA; seven of these exomes were generated using Illumina Truseq 62Mb capture targets and had greater than 99% of the mitochondrial genome covered to at least 5-fold, with mean per-base depths ranging from 28-fold to 4,100-fold 4,100-fold4-fold, n = 7).

The eighth "muscle" exome was the only one from this group generated using Agilent 50Mb capture targets and had a mean per-mtDNA base depth of 2.5-fold with only 13.2% of bases covered to at least 5-fold.

This led us to propose a minimum mean per-mtDNA-base coverage threshold of 20-fold in WES to ensure that the vast majority of mtDNA SNVs are detected.