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Table 5 shows the mean pairwise percentage of alignment sites with a gap, calculated separately for comparisons within Drosophila, within Sophophora, and between the two clades.
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The inter-rater reliability was found to be 0.73 for the Japanese debate with an average pairwise percentage agreement of 84.8% and 0.692 with an average pairwise percentage agreement of 78.9% for the English debates.
Part B: Mean pairwise differences.
The overall nucleotide diversity of each repertoire, summarized in Table 4, shows both the percentage of nucleotides in different loci that are polymorphic (% S) as well as the mean pairwise diversity.
For simplicity, we choose the mean pairwise error penalty and, therefore, can set (alpha _i =frac{1}{i}).
Additionally the weighted intralineage mean pairwise differences (WIMP) were also computed, which measures mean pairwise differences within each lineage but weighting for its corresponding frequency [28].
Mean pairwise dissimilarity based on AFLP markers increased with increasing distance between individuals (Fig. 4).
Mean pairwise differences were similar in Roma and non-Roma populations.
The Arlequin software package[21] was used to estimate mean pairwise differences and mismatch distribution parameters.
5 Mean pairwise differences per kb.
The mean pairwise difference in lengthening achieved was 10 (0–20) mm.
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