Sentence examples for mean pairwise distance from inspiring English sources

We also examined patterns of mean pairwise distance [MPD –see: 13], but conclusions do not differ substantially from MNND and so were not reported.

Phylogenetic clumping in extinction was evaluated using two measures of phylogenetic relatedness of taxa, mean pairwise distance (MPD) and mean nearest taxon distance (MNTD).

Each group has high haplotype diversity (Table 1), and has been defined by high bootstrap values (except a bootstrap of 53 % for A ; Figure 1A), and by high mean pairwise distance with all other groups (see below).

With SNP filtering at a 95% population call rate across the larger population study of 210 individuals, mean pairwise distance between PBMC and LCL genotypes was 0.12% for the 500 k combined array.

We compare our predictions with their data reported as the mean pairwise distance between viral DNA sequences determined using either a Kimura 2-parameter model or a general time-reversible model with site-to-site variation in substitution rates, both methods yielding similar results.

For SWRF*, we set sigmoid function parameters t and u to the mean pairwise distance and to the standard deviation of the mean pairwise distance, respectively.

Three types of maximum and mean pairwise distances, ML-corrected, K2P-corrected, and Hamming distances, as well as maximum and mean ML-corrected distances to MRCA sequence and K2P-corrected and Hamming distances to the consensus sequence, were analyzed.

Following their alignment [21], rDNA sequences were clustered into operational taxonomic units (OTUs) of approximately species-level taxonomic rank, defined as relatedness groups with mean pairwise distances of <3%.

The distribution of maximum and mean pairwise distances for gag and env sequences was studied to address whether applied evolutionary model(s) or specifics of viral distances can help to segregate HIV infections with transmission of single and multiple viral variants.

Comparisons of mismatch rates between LCL and PBMC pairs and duplicate pairs (duplicate genotyping of identical source DNA) revealed equivalent mean pairwise distances (P = 0.42, at the 99% population call rate level; Mann-Whitney U test, one sided, unequal sample sizes; Table 2).

Unweighted mean pairwise distances were obtained from SplitsTree v4.