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Genome analyses show that the races have a mosaic-like genome structure that is consistent with genetic introgression between races that have significantly diverged (mean nucleotide divergence ∼1%).
The resulting dendrogram (Figure 6A) draws a clear picture of the evolution of this region: the Z. bailii sequence is in a basal position and presents the longest branch (mean nucleotide divergence of 1.54 substitutions per kb from the group of S. cerevisiae strains).
The haplotype diversity (h) and mean nucleotide divergence were estimated by ARLEQUIN software, v. 2.0 [ 45].
The mean nucleotide divergence (mean ± SD) between different subgenotypes was calculated using Mega 5 [ 20] under the Kimura 2-parameter model [ 21].
Additionally, the comparison of mean nucleotide diversity (Pi) and the mean nucleotide divergence between groups of each AMP showed that Cg-prp presents more diverse but less divergent groups compared to Cg-defs.
For the RAG2 gene, the mean nucleotide divergence in the sample was very low (0.6%) and there is an extensive sharing of haplotypes between very distant localities, including the localities belonging to distinct mitochondrial lineages.
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The distributions were plotted to depict mean nucleotide divergences between alleles within each population subset (i.e. geographic region).
Besides, values of mean nucleotide divergences between groups of AMPs show a higher divergence of Cg-defs groups compared to Cg-prp ones.
The average nucleotide divergence between the two groups was 0.0301.
The maximum nucleotide divergence of the 22 isolates from WN-NY99 was 0.35%, with an average nucleotide divergence of 0.18%.
The average nucleotide divergence for the 10 large subfamilies was 0.053, with an average paralog divergence of 0.046, and ortholog divergence of 0.050.
More suggestions(15)
mean nucleotide content
mean CpG divergence
mean nucleotide identity
mean interspecific divergence
mean nucleotide sequence
mean silent divergence
mean posterior divergence
mean nonsynonymous divergence
mean nucleotide polymorphism
mean intraspecific divergence
mean estimated divergence
mean nucleotide similarity
mean nucleotide distance
mean genetic divergence
mean nucleotide length
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