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All the identified polymorphic markers were included in the model at c = 1.6 cM, meaning that the mean marker distance of the entire marker set was ~1.6 cM.
The Affymetrix 100 K Mapping array has a mean marker distance of 24 kb with a median of ~8.5 kb.
The linkage map contains 8,007 markers, with a mean marker distance of 0.195 cM, making it the densest genetic map for the genus Prunus.
Copy number variations were defined as gain or loss regions of at least 200 kb with a mean marker distance of not more than 5,000 base pairs.
We chose the Affymetrix GeneChip 50K Hind array, which has a mean marker distance of 50 kb and has a resolution equal to the previous CGP experiments (Fig. 4C).
The physical distances (1 to 6 Kb) that were calculated based on the mean marker distance of 127 bp, roughly corresponded to the average distances between 7, 15, 23, 31, 39, and 47 SNPs, respectively.
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The correlation of r LD of adjacent SNP ranged from 0.95 to 0.98 across all chromosomes, with a mean of 0.97 at an average marker distance of 60 Kb.
In this confirmatory project, we have followed up the 6q27, 14q22, 11q25, and 3p26 CRIs with a total of 24 additional flanking STRs, reducing the mean interval marker distance (MID) in each CRI, and substantially increase in the information content (IC).
The consensus map had an observed length of 1,567.7 cM and a mean inter-marker distance of 8.4 cM.
However, it did succeed in filling a large (13 cM) gap, and in reducing the mean inter-marker distance.
This map consisted of 20 linkage groups comprising 326 loci and spanned ~1500 cM with a mean inter-marker distance of ~4.5 cM.
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