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Molecular dynamics umbrella sampling potential of mean force computations are used to quantify the impact of activating and inactivating mutations of c-Src kinase.
The potential of mean force computations predict that a specific double mutant can stabilize c-Src kinase into an active-like conformation while disabling the binding of ATP in the catalytic active site.
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In the present study, multi-ion potential of mean force molecular dynamics computations are carried out to clarify the mechanism of ion selectivity in the KcsA channel.
Tests on the method are conducted and show that it yields more accurate force computations than previous formulations as well as more accurate geometric information such as mean curvature.
Figure 2 Potential of mean force (PMF).
Figure 3 Time required to solve (pmb{N^{2}}) force computations using different configurations.
Shown is the time required to solve (N^{2}) force computations using different configurations.
Elderly subjects had lower maximum force and normalized maximum force and lower mean force and normalized mean forces in the medial masks as well.
Models were evaluated using statistical mean force potential [ 53].
Mean force-separation curves are shown.
The mean forces ranged from 18.36 to 38.76N.
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