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Mean exon length also strongly negatively correlated with exon/gene ratio (r2 = 0.957, r2adj = 0.956; Fig. 2C).

No statistically significant correlation was observed between mean exon length and mean CDS length (P = 0.132; Fig. S2).

A very strong negative correlation was observed between mean exon length and total number of exons (r2 = 0.937, r2adj = 0.936; Fig. 2A).

Similar correlations were observed for median exon length, and the r2 values were close to those obtained for mean exon length (see Table 2 for details).

The negative correlation was weaker but statistically significant between mean exon length and either number of protein coding genes (r2 = 0.712, r2adj = 0.703; Fig. 2B) or the total number of genes (r2 = 0.706, r2adj = 0.697, Fig. S1).

Using the mean exon length and regression models developed based on the genomic data for other species, we computed the expected total number of exons, total number of genes, exon/gene ratio, and total number of protein coding genes for P. taeda.

Mean exon lengths do not display a Λ-shape dependence on the expression level except for a possible weak effect in Arabidopsis (fig. 2 and supplementary fig. S6 [ Supplementary Material online], table 1).

As mean exon lengths reflect the combined effect of intron density and total protein lengths, the increase in average exon length with increasing expression level in C. elegans is likely to be linked to the high rate of intron loss in nematodes (Carmel, Wolf, et al. 2007).

The number of exons was 6012 (1.55 exon/gene on average) and the average exon length was 716 bp.

The exon/gene ratio also increases (Fig. 1B), but the mean and median exon length becomes shorter (Fig. 1C), whereas CDS length remains relatively constant.

The mean coding exon length is 206 bp with a SD of 325 (range 1 27,708).