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The method is tested on two model problems based on the qualitative features of the solutions obtained (i.e., dispersion or smoothness of potential vorticity contours) as well as on the increase in mean divergence level.
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The number of sequences, mean pairwise divergence levels and the strength of coevolution between amino acid sites in MSAs are strong parameters affecting the ability of non-parametric methods to detect coevolution.
As we show, despite the introduction of statistical filters to the analysis of coevolution, SN and PPV still depend on the size of MSAs, mean pairwise divergence levels and strength of the coevolution signal.
We used pairwise uncorrected mean divergence between taxa (p-uncorrected) derived from mtDNA as a surrogate for levels of species divergence (from [ 26]).
Zebrafish and medaka maintain two roughly proportional peaks of Ks values (approximate mean values of Ks = 2 and Ks = 4), indicating two broad age (divergence level) categories of duplicated genes in these species, irrespective of duplicate set number.
On occasion it would be mean "divergence" between Wales and England, he said.
Re-analysis of intra-specific divergence values for other samples, after excision of these taxa showing deep divergence, produced an 'adjusted' conspecific mean divergence of 0.21%.
Although the divergence mainly resulted from the loop regions, the divergence of miRNA* strands also contributed partly to the high divergence level (Figure 3A and Figure 4).
Many regions of elevated mean divergence can be found interspersed with lower divergence regions.
Thus, we expect the mean sequence divergence between northern and southern localities to be similar to mean divergence among clades.
Within-family divergences were estimated using the mean pairwise divergence between members of the families or the mean divergence between each member and the family consensus.
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