Sentence examples for mean coverage depth from inspiring English sources

Then we calculated copy number for those genes in each individual on the basis of total exon coverage depth normalized by mean coverage depth and filtered for genes with copy number between 0.4 and 1.6 in all individuals.

Mean coverage depth (total base pairs in aligned reads divided by total base pairs in reference genome) for these strains over all samples was 3.9×, with depth-of-coverage means varying widely by body site from 0.04× (right antecubital fossa) to 11.1× (tongue dorsum) (Supplementary Table 8).

The mean coverage depth was approximately 12× in case of both alignments.

Total trimmed reads, mean coverage depth and NCBI SRX numbers are listed.

Using a standard Illumina TruSeq PCR-free protocol, we also obtained 100.0 Gb WGS data resulting in a mean coverage depth of 31.5×.

The mean coverage depth of target sequences was 109× (Table  2), while the coverage depth may be somewhat overestimated because PCR duplication was not removed for the mapping.

For 10, 20, 40 and 80 ng genomic DNA inputs, the mean coverage depths calculated using consensus reads were 98x, 187x, 336x and 530x respectively (Table  1).

After we changed Step 3 in the protocol from 1 cycle to 3 cycles for 10 ng and 80 ng DNA inputs, our mean coverage depths for consensus reads increased from 98x to 208x and from 530x to 839x respectively (Table  1).

This led to a sequencing mean coverage and depth of approx. 72% and 11-fold over the whole genome, respectively.

Mean coverage (read depth) of the parental genomes was 3.2x for the paternal parent (MRD60) and 5.4x for the maternal parent (MRD30) across 149 Mb.

For each population the number of samples we considered and the mean coverage and depth of mitochondrial genomes we extracted from exome data, are reported.