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It is important to note that some of the pseudogenes with frameshifts in homopolymeric tracts may still conserve functionality (Tamas et al. 2008; Wernegreen et al. 2010).
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For example we have recently found that during motor learning curved hand trajectories did not conserve the smooth symmetric profiles characteristic of automated straight reaches [ 9], yet other more subtle patterns may still be conserved under such conditions.
So it is possible that although the exact sequence changed among species, transcription factor binding sites may still be conserved.
Moreover, in this study, we implemented a procedure based on the local alignment software CHAOS, which may still miss some conserved segment candidates.
Thus, existing ORFs may become functionalized in another frame, whereas the original protein function is still conserved, in particular in some ant species.
One may argue, of course, that shuffling columns independently will change the gap pattern of the alignment (even though it still conserves pairwise sequence identities).
We observe that the GLRT still conserves its 1 dB gain noticed in the previous context.
They're building a business, cultivating legions of dedicated user communities, evolving and improving their product, and still conserving cash.
This corrected system is hyperbolic and the density, momentum, magnetic induction, and total energy density are still conserved.
Consistent with this idea, the core region of A. tamarense H2A.X is highly conserved, indicating that it may still be able to interact with DNA in a manner similar to H2A in other species.
However, the rice enzymes generally still contain the conserved glucose binding residues lost from the G. max hydroxyisourate hydrolase, so they may still act as glycosyl hydrolases, rather than as other kinds of hydrolases.
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