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Conceivably, these 43 ESTs may represent transcripts important to appendage regeneration.
These novel sequences may represent transcripts specific to P. mariana related to its species-specific traits.
These sequences may represent transcripts from paralogous genes, alternatively spliced genes, or a combination of both scenarios.
The read counts of transcripts having no significant BLAST hit to the other genotype were also examined, as these may represent transcripts not assembled or expressed in the other transcriptome.
Although the unique contigs in the FGAS dataset may represent transcripts that are specific to the cultivar used in our study, there is a possibility that they may represent novel genes that are induced by environmental stress.
Similar(55)
This finding supports the hypothesis that at least a small percentage of sense transcripts may represent intact transcripts, such as regulatory sRNAs or mRNAs that are transcribed from promoters internal to the predicted ORF [ 5].
Whole-genome tiling array scans have revealed that many small RNAs have genomic loci that overlap with longer transcripts, and the longer RNAs may represent primary transcripts for the shorter mature RNAs [ 18].
Those 93 genes not found in our data set of 2,963 conserved genes may represent 1) transcripts expressed specifically in the mouse placenta, 2) transcripts expressed in both mouse and elephant placentas, 3) transcripts not expressed in the term placenta, or 4) transcripts important for placenta function but not expressed in placenta tissue.
Most, but not all, of the dubious ORF transcripts are located on the noncoding strand and may represent antisense transcripts.
The assembled contigs may represent mature transcripts that are generated from tRNA punctuated cleavage of polycistronic transcripts [ 43, 55].
These may represent undocumented transcripts or splice isoforms that could have been amplified in addition to or instead of the expected transcripts.
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