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Such events may represent instances of evolutionary innovation such as, for example, the origin of offspring solicitation.
The 144 genes that are differentially expressed in common with the two microarray technologies may represent instances of relatively homogenous expression across the annotated gene, as the probes from these two microarray platforms should tend to be biased towards the 3'UTR end of the gene.
Alternatively ORFs of unknown origin may represent instances of HGT or tinkering inside the organelle exclusive to the ciliate clade.
Alignments to the reference genome for which one or more inserts seem either abnormally long or short may represent instances of SV (Fig. 1).
These may represent instances in which the probes were designed to sequences that differ between the A and C genome orthologues.
Some of these multicopy sequences may represent instances of copy number variation, with an extra copy being present in just a subset of the parental lines, as many could be mapped due to the presence of a segregating null allele.
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However, because these cases may also represent instances of key confusion (participants reversing the "change" and "no-change" keys), these participants were also excluded from accuracy and response time analyses.
Submodels can represent a single instance usually to provide context to other elements, or may represent multiple instances such as a list of trees (cf. an array).
Absolute number of differences between exon sequences (Table 1) was calculated using PAUP* [ 66] with the data corrected to remove identical sequences recovered from the same isolate as these may represent multiple instances of the same sequence.
Finally, sequences found in A. tamarense Group IV and missing in the other 16 genomes in the analysis may represent potential instances of HGT in dinoflagellates, which can be further evaluated with phylogenetics.
Note that a variable may represent for instance using one or another product in a certain phase of the process, applying one certain methodology or not, and so on.
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