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While the consequence of these changes on the structure and function is however unclear our phylogenetic analysis sets the stage for future functional studies that may include transcript and gene deletion analysis.
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These may include transcripts for highly interesting pleiotropic proteins such as transcription factors possibly present at only 0,001 copies per cell [ 16].
These biomarkers may include transcripts with different isoforms.
The isogroups containing numerous isotigs may include transcripts derived from several or many loci, e.g. retroposons, or from transcripts undergoing AS [ 23].
This method proposes a reasonable number of regulatory candidates for lists of input molecules that may include transcripts of genes and metabolites.
These genes are enriched in mouse sarcomas and in human RMS as compared to normal mouse or human skeletal muscle (Hettmer et al., 2011), and may include transcripts of fundamental importance for sarcoma growth.
This may include: Copy of your transcript.
Transcripts without sense, antisense or long non-coding label were defined as 'unknown' (5) and may include misassembled transcripts, but also (anti sense transcripts or lncRNA with insufficient alignment length or identity to known sequences.
These genes may include novel transcripts or in some cases their transcripts may not have been captured in any of the seven tissues in our RNA-seq dataset due to low abundance.
A causality graph associated with a scoring procedure was used to propose upstream regulators from various sets of differentially-expressed targets that may include gene transcripts as well as metabolites.
The remaining unannotated transcripts (7,382) without homology to any protein may include non-protein coding transcripts, novel protein transcripts, rare transcripts that are expressed at low copies, transcripts with very low expression levels, or even transcripts which may have lethal functions in Escherichia coli.
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