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As such this library may contain repeated probes which result from the fact that there may be multiple occurrences of specific sequences of length l present in the sequences that were used to build the library.
The massive Illumina RNA-seq datasets may contain repeated sequence-reads that align to identical genetic loci.
The DHFR amplicon is large, up to several hundreds of thousands of nucleotides, and may contain repeated segments of the endogenous CHO genome [ 3, 4, 39].
As both species occur in flocks (sizes ranging from a few individuals to some dozens), our data set may contain repeated recordings from same individuals.
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Another limitation of the study is that the hospital data extracted may contain repeat in-patient treatments for the same individual but numbers would be limited and we do not anticipate this pattern to have changed during the study period.
Many genomes contain repeated DNA sequences [ 5], thus a short DNA sequence may match a reference genome more than once.
The existence of repeated DNA-binding domains not unique to AP2 transcription factors, the WRKY family of transcription factors also may contain a repeated DNA-binding domain [ 71].
According to many authorities, music contains repeated motifs that may be combined in various ways to produce a larger composition, and so includes atonal music such as some percussion, while also excluding pure tones that do not form such patterns, such as train whistles (though one could play a train whistle in a musical fashion!).
A TR protein may contain short repeat units (3-4 acids acids), which occur tens and hundreds of times in tandem.
Although smaller scaffolds may contain additional repeats, there is a increased possibility that these smaller scaffolds are either contaminated sequences or paralogous sequences, therefore we excluded them from the heterozygosity analysis.
Although tools for repeat and misassembly analysis of bacterial genomes have recently been developed [ 8], genome browsers generally contain little or no information regarding which parts of the assembly have an unusually large number of aligned sequences and therefore may contain collapsed repeats.
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