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Together these data suggest that a number of SNPs have significant cis-acting effect(s) on the expression of ERAP1, and that this effect (or effects) may be transcript specific.
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Similarly, there may be transcripts from endophytic fungi [ 2].
However, the larger sequences, without Blastx may be transcripts encoding novel proteins with no similar sequences in the database.
It could also be possible that some of the 80 non-hybridizing arrayed negatives may be transcripts specific to one of the six carbon sources used in preparing the cDNA library but not tested in the microarray analysis.
Collectively, our data do not support the view that SF2/ASF plays a general role in mRNA translation, but suggests that the biological importance of this aspect of SF2/ASF function may be at transcript and cell types-specific events.
CodingQuarry reports on assembled transcripts which, according to the coding sequence predictions, may be multiple transcripts merged together in the assembly process.
Isoform overabundance may be due to transcript fragmentation or chimeras created by assembly, and/or complex alternative splicing and high polymorphism common in large vertebrates.
This finding suggests that they may be aberrant transcripts resulted from alternative splicing.
These results indicate that most of these genes may be novel transcripts specific to barley.
Another 137 are also upregulated in the ML/TAP, suggesting these may be SPL transcripts at 0.4 mm (Table S12).
Of those, 71.6 % (2,008,503 contigs) did not have an ORF suggesting the majority of these contigs may be noncoding transcripts.
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CEO of Professional Science Editing for Scientists @ prosciediting.com