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Indeed, the ccm and rbc genes (oxygenic photosynthesis) displayed maximum transcript abundance after the switch to light (06 30 and 07 30), whereas the cta genes (respiration), displayed maximum transcript abundances when the dark period began (18 30).
Indeed, light-stable photoreceptors are highly expressed at the beginning (PHYC, PHYD, and PHYE) or in the first half (PHYB and CRY1) of the light phase, while photo-labile PHYA and CRY2 reach their maximum transcript abundance close to the end of the light interval.
We found also that among these 1344 genes, 40% displayed a zenith (peak-up) or a nadir (peak down) in their transcript abundance at 07 30 (i.e. 1h30 after the transition from dark to light) knowing that most of them were characterized by a maximum transcript abundance (Fig. 2A).
The second category is characterized by genes whose maximum transcript abundance is observed at the end of the time course, coincident with the ethylene burst in apple.
Salinity and oxidative stresses in maize roots have shown a maximum transcript abundance of ZmCPK14, and ZmCPK1, ZmCPK5 and ZmCPK37 demonstrated the highest expression levels in response to drought, cold and ABA, respectively.
Libraries of salinity and cold stress in rice roots have shown maximum transcript abundance of OsMAPKKK64 which is a member of ZIK subfamily (Fig. 6) and with drought stress elevated transcripts of OsMAPKKK28 was observed (Fig. 7).
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At 12 hr of treatment, the expression of ICME reached the maximum with its transcript abundance being at least 10 times of that of the pre-treatment.
The aerial part of plants with about eight true leaves were harvested at zt12, the time of the circadian maximum of AtGRP7 transcript abundance.
Step 5. Utilize the optimized positional weight and stacking energy to estimate the maximum likelihood estimation of the transcript abundance, which can be presented as in Equation 7. (7) μ = ∑ j = 1 L n j ∑ j = 1 L i e x p (α + l o g (1 1 + e x p (∑ k = 1 N - 1 w k ∈ b k, b k + 1 ) ) ) Where L is the length of the transcript, and n j (j = 1, 2,..., L) is the read count of the jth position.
Transcript abundance reached a maximum at 21 DPA, being 3- to 4-fold greater at N200 and N350 compared with N100.
Our analysis has revealed that among the different tissue-specific libraries, maximum numbers of MAPKKKs were expressed and their transcript abundance was found in crown vegetative meristematic tissue (NME), ovary and mature stigma (NOS) tissue libraries.
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