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Maximum recombination break points detected in Kolkata strain IDH1300 were 8 and a single break point location was detected at 1205nt position.
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Maximum χ is a substitution distribution method that searches for significant clustering of substitutions at putative recombination break points (Maynard Smith 1992).
A LOD score of 5.0 with a maximum recombination of 45% was used to assign markers to linkage groups with the exception for LG6 and LG11, where a LOD score of 8.0 and 9.0, respectively, was applied to break spurious linkage according to Muchero et al. (2009).
However, in this study, such sequences could not be identified as recombination break points.
We further narrowed down the recombination break point by genotyping inside the candidate region.
To visualize the recombination break points, the bootscan program implemented in SIMPLOT [ 61] was applied.
Recombination breaks down linkage between eye color and Far, so both yellow and purple alleles persist.
Recombination breaking points appear distributed along the entire genome.
Recombination breaks down allelic associations in double heterozygotes.
The sites of presumptive recombination breaks are shown by vertical arrows in Figure 1A.
In the course of time, recombination breaks genomes into small segments with separate ancestry.
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