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The parameters of w s and w c in expression (5) were defined at the maximum prediction performance.
Based on the ROC analysis, we evaluated the maximum prediction performance of our AEP system by using a recall, a precision and a cutoff value.
These values for w c and w s (parameters used for calculating affinity scores) were chosen to provide the maximum prediction performance (ie, F-measure) from our preliminary experiments.
When our AEP system is used as a prediction system, the horizontal dotted line shows that the cutoff value at which the system achieves its maximum prediction performance is 7.54σ.
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Among 11 tested networks, the ANN with best prediction performance produces maximum percentage error of only 3.21%.
RLC and MRF show the results when they achieve the maximum F-measure based on average prediction performance on each testing GO term.
The objective of SVM is to determine the optimal weight w0 and optimal bias b0 such that the corresponding hyper-plane separates S+ and S– with a maximum margin and gives the best prediction performance.
When calculating prediction performance, we labeled the maximum score inside each ChIP-seq peak region with a positive label and labeled the maximum scores for the negative regions upstream/downstream/between the peak regions with negative labels (Figure 1).
Firstly, failure prediction models have been implemented through machine learning approaches using evaluated performance metrics and also demonstrates the maximum prediction accuracy for Naive Bayes.
Figures 3 and 4 below show plots for exon- and base-level maxima, respectively, over the parameters and of metastate HMM's prediction performance.
Mean AUC was used to assess the performance of the models [ 92], where 1 was the maximum prediction and 0.5 suggested a random prediction.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com