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Search parameter mismatch was set to 5; maximum period size was set to 2000.
We examined ten classes of SSRs by using a maximum period size of 10.
We examined ten classes of SSRs by using a maximum period size of 10 with default settings.
Tandem repeats were detected using the Tandem repeat finder (Benson 1999) with the recommended settings, and a maximum period size of 500 bp.
We used stringent cut-off parameters as follows: matching weight = 2, mismatching penalty = 7, indel penalty = 7, match probability = 80, indel probability = 10, minimum alignment score to report = 50, and maximum period size to report = 6.
We used the following parameter values within TRF for genome analysis: alignment weights +2, −7, −7 (representing match, mismatch and indel penalties); matching probability of 0.80 and an indel probability of 0.10 (pM = 0.80 and pI = 0.10, respectively); a minimum alignment score of 20 and a maximum period size of 10.
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For this analysis, tandem repeats are defined as regions with a minimum size of 25 bases and a maximum period of 2000 (see the section Materials and Methods for the complete list of search parameters).
MAX_PERIOD: the maximum period length.
Maxi as in maximum size, maximum effect, and maximum expense.
Constraints include those related to the maximum clearcut size, green-up period, and minimum harvest age.
It ceased production in April 2003 and as best we can determine by hatchery records, it raised 12 flocks during the study period with a maximum flock size of 3,000 birds and total production of less than 36,000 broilers.
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